Scaffold Ga0208942_1026996

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1026996
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1837
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F031867	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_10269962	F013759	N/A	MKVEFGMSVFSKRETLLGIELTTHNGIVASEDALYEQRVVEFSIGIIFAIFTIGFVSKGEKIDTPDMDNLQRAMKSFESEMDKSKFEK
Ga0208942_10269963	F017826	N/A	MDKLKRVWNVVCVPMAFFLGAINMWIGETAVGCLFILFATNETINKND
Ga0208942_10269965	F019136	N/A	MSLTITNYKKLESWSHHYKEFMIGEVIETETEYSFRVGYNSTPYIIKIFRQGTITNEYEMILRDGADITQYGREWIAGRKLKSLELTALIFEALIVKYKPKAQTQMNNNINYFPS
Ga0208942_10269966	F031867	N/A	MKIIYMQRTIEMIVKNEIELSADSLLNTKPTRVETIKEQNYLVYEFDNNEL