Scaffold Ga0208942_1013200

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1013200
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2718
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065418	Metagenome	127	N
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_10132003	F070857	AGAAG	MKVICIDADNKPQNVPVEEWVQEGDMYTVTRIVKMGLQKDIYGFLLKEVQLSSRSFPYELYDSSRFLPIGILSDMKEEEKVNIEDVNLELI
Ga0208942_10132006	F065418	N/A	MEYTVNDILKECNALVYEFQNSPKKRLRPMLDKRNYLIAILYYKFGYTEEKISTIYNIKRVSVSVSKKLPYTLLEYGDNVFKENAKEYLIKYPYDFPSFTNKYKKDKYITISFDIKTLEKIKAYRDIINEKSTAKTIKRLVTNSLKLWGK
Ga0208942_10132007	F067397	N/A	MGKMKELYYELLHANNGEIPQEATIADLAKMNDLKIYEWREYERSQNHVKKPKNEGSN