Scaffold Ga0208942_1010780

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1010780
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3035
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_10107802	F002387	GAGG	MASFLEDVNQMVIDAVYQDISEQLLEDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYDIKEGDEDYLC
Ga0208942_10107803	F001460	GAGG	MLGYTESDLNRMINAVHDAKLFYLRTPSDLMDKTELRKDLEDAVSFLQGLWAEGYFD
Ga0208942_10107804	F063705	AGGAG	MTKSSHFIEYMKIHLISLNQDWEATKNGEPLKDDEYDPSDDYFLGAIEATEHLLSVATDIMNSTNERV
Ga0208942_10107805	F000263	AGG	MNSEDIGLPPHLQRMVNYGVSGLDIMHGELKNLMLIAEQQLASAIETEEESEEAMDSMDRTRCEGALDTLVDIYNLTYQLSFAIGARNEA