Scaffold Ga0208942_1005487

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1005487
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4318
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003422	Metagenome / Metatranscriptome	487	Y
F074872	Metagenome / Metatranscriptome	119	Y
F104501	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_10054871	F104501	GGCGG	MGDRANFGFKQNNGDTLFLYGHWAGHNMLGNLSAALAAAEPRWGDSSYATRIATSHLIGEDWTSTTGWGFSI
Ga0208942_100548710	F074872	AGG	MSALNATINPYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNSSGSVRVLLEMPTKETRWTTVSNSALTGA
Ga0208942_10054875	F003422	N/A	MTNELISSKYTFICDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIQSTNQTKEEQMETTVSPAVEYNPDLLVTYKVISNYSDPEYATDKVRNIEWDLHNARTNSKAVNAIQNRIGLVSDIITEAYADSLDQETLQAIAEALEIPLTKEISWEATLHVSGTMQVSLLEDNDFESELNDNLFVDSQHGDIQIDNYEVANVQEAY