NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1002491

Scaffold Ga0208942_1002491


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1002491 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6433
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F003299Metagenome / Metatranscriptome495N
F004234Metagenome / Metatranscriptome447Y
F009004Metagenome / Metatranscriptome324Y
F015420Metagenome / Metatranscriptome255Y
F019928Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0208942_100249110F001808N/AMKYLAIILLLSSCSAQYHLNKAIKKGYKCEETGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYNTVYVPKTRLEKRIEYKLKVKTIYKDRIVEKAKAKATRPRTRGNLSLLFVGVGIGLLLSYLFKFARERYMF
Ga0208942_100249113F019928N/AMKHSGVLSIIVFSTGYLTGIALLCEPAIYLKLAGATVIGYLSFILALQWEGNE
Ga0208942_10024912F003299N/AMKIYKVVYKTFDYWNGPVKLVTRIIEAYDRDHVKQLIQKNDDLILLIEEV
Ga0208942_10024915F004234N/AMNFIDLYKRDNTYFSNWTTSYDSDVYIAGTIEPFTYDATETDDGDMSLFILSDANLNLLKSKL
Ga0208942_10024916F015420N/AMKKLIKYFTPVGEEQIAFAKALIVVVTAVISILFLFTFLELIL
Ga0208942_10024917F009004N/AMKTFHQILDYLEVQQQEDKLNTNQLHLIIQTLTTFLNKEQLQEIENLFNQFKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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