Scaffold Ga0208942_1001842

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1001842
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7545
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F053753	Metagenome / Metatranscriptome	140	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_10018421	F076869	N/A	MITQFMITEITKLISSAQKQNVILSAEYIDALYELNIQDIVMLRNSYESEKILS
Ga0208942_100184210	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYRKYN
Ga0208942_100184213	F000716	N/A	MEKLKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELATMCSKKKQRIINVYKKAQIVLNKLKQDLTISYSNFIFKTLFPNSPITEYLLSDIETDTSFKNTLTFKDLDINKDKIITIFISEGILPRNFLSLELPQNQLPRLKNESKS
Ga0208942_10018427	F053753	N/A	MNHQLKYGYSQLGTNILVKINCKMSNQQAIELEKKFPEICMWQTRNGYRIEGSFNTRENNRYVYDKFEDFKLSLALNLNDFKINKLIDKNQVLLNQGNLELSVADLDLPF