Scaffold Ga0208942_1001445

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1001445
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8625
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013525	Metagenome / Metatranscriptome	270	Y
F020539	Metagenome / Metatranscriptome	223	Y
F024771	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_100144515	F020539	N/A	MTRTTNEQIIALNGHITGVKRELRILATQLTKLEKQLQNLYWSIMIGLGALSLALITIFLAK
Ga0208942_10014455	F013525	AGG	MHDLSLKNPDDIKAELDSCSEELANSLYEFRRCEEFKKITFSQITLTNKMEKNCSVAEAEKWAYCDKNYTIIIEGLLVAEKNYSIAKGKYANLQSWVDLYRSWLVTQRDLSR
Ga0208942_10014456	F024771	GAG	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCVSRGFLCRKLGLNAVDDSKSFAESIIPMFAKLPTLIKAFPDYFVYAPKEAHKQEQFFVELKNATWEGGKTLAKIKVRDLKRYIYFEQAFTNYHTRFTICFPLADKVLFKSCDQILKLLPKSQLKSFPNDGIEYFEVQLN