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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027627 Open in IMG/M |
| Scaffold ID | Ga0208942_1000724 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12784 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (51.61%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.5046 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010917 | Metagenome | 297 | Y |
| F018712 | Metagenome / Metatranscriptome | 233 | Y |
| F019968 | Metagenome / Metatranscriptome | 226 | Y |
| F070036 | Metagenome | 123 | N |
| F086632 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208942_100072412 | F010917 | AGAAG | MNLPDEIVFGSRLIKLNLIDQEIASKKNIFGEFESSKNLMTLDKSLNPIEMSNTLLHELFHLLHDEYKIDLSAKAEEITCNSLANGICHILYQNQNLLEFLYKSLKR |
| Ga0208942_100072424 | F019968 | AGAAGG | MVRKDVGVICSMSYYEMKLMTCALSRILLENEVRGINTKKSITTLISKLNNMLTKQC |
| Ga0208942_100072426 | F086632 | GGA | MKILIPRLVLEDLYRILKKYFIVQEFTSVHKITTKEKKLYNEVAKLLEENK |
| Ga0208942_10007244 | F070036 | AGGAG | MEKKSLEKRFLCQNRNKNIVSVPIKYIKYSNQFDKHNWLSLKVRSERDNLYLKDNLARKRLNTLPDINNLFNPIILYACDYLICIFGNKRLKTAIDKGYTHIDCLIYDGFQQAVIVGTSIWNTFKEHRLSKVDSFLTTDNDTITNIDRYMVEEKQIIDEYATHQQILTREALKSNLDIMETGCGYYSTPILVEIAKSKGIKLIGFVQEINWARRFDYLIGDHYQQIHINFENEIPLTQRFGMCFLDHEQLVKYRIKHLNHILKHTDTVVVHDADKVSSFALLHKPYTIEMFKHLTPNTAVIKNV |
| Ga0208942_10007247 | F018712 | AGAAG | MCERKKPKMLDKKMRGSHDLEVRIYDLMKQSDFDHEEIQRLNLIIKKLEEDLENSFKSVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |