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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027627 Open in IMG/M |
| Scaffold ID | Ga0208942_1000687 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13067 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (20.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.5046 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009945 | Metagenome | 310 | Y |
| F011473 | Metagenome | 290 | Y |
| F011827 | Metagenome | 286 | Y |
| F016246 | Metagenome | 248 | Y |
| F016922 | Metagenome | 243 | Y |
| F025916 | Metagenome | 199 | Y |
| F051685 | Metagenome | 143 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208942_100068713 | F009945 | GAG | MSAALATFKRTHGIATHRLAGAGHRYAWMAFFATITMKDGTRRAFTELAHEYSMASLMRRNKVADADTELEACQFLAERNGIPWPADEPKKRKAKP |
| Ga0208942_100068719 | F016246 | N/A | MSQLDFFPHIPRRLTHDEILAGFAELLRAVEAMQFWQPYP |
| Ga0208942_10006872 | F051685 | N/A | MNTPNWLRFRAGEKTHVVTGMSGPMHVVPCGYAAHGATGVPDKRAKKCRTCSRAVRPVSSQERRIAGHAPE |
| Ga0208942_100068720 | F025916 | N/A | MPTHLTRPHLGCRLRDCGAPDCPTCAGAEAARLYREQQECEHEEHDHGICLACGADITDELVGQAEDAADAREDR |
| Ga0208942_100068722 | F011827 | N/A | MRNTSHSANTHNLTRSRWKARDAVSSQRHGEKMDDIRLACHIWLLRRCPGYAEEHSTHVEQYARGIGRA |
| Ga0208942_10006874 | F011473 | N/A | MNWKKYITDPATNRPKRGAISRIAALLGTHYGCVRRMFDGIWNPTDEEAKGLRAIVESRTNLAPKKRSDAGKKRAAYRKRAVAKTGVAAPQLKALRSAKKTALK |
| Ga0208942_10006877 | F016922 | N/A | MSNPIRINSRAIQCRADAEGATEYAIRYGGRDFIVIAHSRLEADISVEYYRAPEADDSTTLLPGIPPSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |