NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1000120

Scaffold Ga0208942_1000120


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1000120 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37005
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (77.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004789Metagenome / Metatranscriptome423Y
F007028Metagenome / Metatranscriptome359Y
F012571Metagenome279Y
F024498Metagenome / Metatranscriptome205Y
F078617Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208942_100012017F078617GAGGMQTRVFLSGAIEDVQSDFKHSWRDEATALLDHRGFKAVNPMDYALEEENCEPKEMVDKNLFLQKSCDILLVEYRLLYRAYIGTDFEMTWAHFNNQPIIVWAHQDLQHRKYLKFLATKLADTLEEAVEYISNTYPSNK
Ga0208942_100012027F012571AGGAMAIKNPDDVIGVCSECKSDQPTRYMENNAFAQEGKAVVCKYCGGVVIITYRETRDSSLDSSDRERGI
Ga0208942_100012029F004789GGAGMTTGNLYKNPSTKDCWVYCSSCSRCQDKGRYTKCNGCSGRYDPSGRIETDNDDFCDCKNGILRWKTKNGKVLMSRFKTNPFKGNVRYEKKSEDERDWDSYLKDMRNKMGNPNWNPVSIYE
Ga0208942_100012042F007028AGAAGMPKINKNAFEETNGSPIDQAVSNMAGQISLSSSPIFICGVNRKINIGNFENVDVYAGITIPLDGIDPLDREAFSEAVKDAAAYGFSLVSKETGERYTLIKEAQQSK
Ga0208942_100012053F024498AGGAGMSKVAWDYIVPIVMPKDLKGVTPGKLPESLLRSIPGGGKLHHRAADAWNAMVAKAKADGVELKPTSSGD
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