Scaffold Ga0208942_1000046

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1000046
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56054
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F015212	Metagenome / Metatranscriptome	256	Y
F050412	Metagenome / Metatranscriptome	145	Y
F105034	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_100004614	F015212	AGGA	MATQYPTSLDNFVNPSSTDRLDSVAVPHHKQHTDVNDAVEALQTVVGLNPAGSHLTVKDRIIAAETNISTQSVLNGLTDVTINTVASGQILRYNGSQWINYAESDLVDGGNF
Ga0208942_100004618	F001360	AGGAG	MSLAKFRKVGTKTGSGRFVVSEGIAPAAYLLPSQGLPTWYSDSEDDRFEIVICKGTVLSVVADSNGDARIVPANGSASSVTWGDSMPASWNPLNGATPAYSSGATDTVAVAAYSVPVGVAQYDLYRPFDKGTSQGAGFIARGYVEYPMVSLVNDDVTVGSLIKADHMGRPVSLTTTLCGTNPYLQVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRSGSYSGKLGIRSNLDVNNVIGAFRVNLTL
Ga0208942_100004634	F105034	N/A	MYINDNDDFEMPNFLYRTIMELMKQSLDMGTLLSSDQQKLRAYKEQTKKLFKNKWYEIAKALEAFSIIDPCMCSMEEKEIYCDLCKGARYIINSSLTPDEMREVGLITNAGMNAEIIGKLQKSLNEILSQYP
Ga0208942_100004668	F050412	AGG	LSTLTEKFKLDSVLFDQVAENIDSLQSTSRTQTLVVGKKTNFKGSINGVEIPASVTLKEASLSRLSVLRQQSPYTGKEYYLVTGVMNPVKMDISITNEGQEINIIDLLHTFLTDTGKVVDRDKFVASLGSLGMNFANGMPLFFQQFGANEDGFKHAINAFKSAGAVDVTGRIETPGRIVAAYQHKTGVALNSFELGTTDRSKSRTNQGFLNLVDSAVDTFQRVYGLRLQAHVLSEKMDTLSQAKIKDAEEKRQKLMQLSRQWVSNWSGSQQRIQVTPSGAQEKQDIYDPVNAPCGRFTMVVNGTDVPCDLWSNSAQANSTTAVAPAATDEMPF