Scaffold Ga0209149_1108522

Overview

Basic Information

• Taxon OID: 3300027626
• Scaffold ID: Ga0209149_1108522
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2143
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021203	Metagenome	220	Y
F067181	Metagenome	126	Y
F102653	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209149_11085221	F067181	AGG	MSNGVFNFNFLALLLSETLGGPKFTLGGPMPPGRPLADKFLYPKRVLYNI
Ga0209149_11085222	F021203	GAG	MSNGIFNFNFLALILSEILGGSQIYITGPFAPRNPPSVKILKRAQVLAYIYIIVNFQLRSSIHAGLTERSLSTIGLH
Ga0209149_11085223	F102653	N/A	MTANLLTLNSSKTEFLLIGLKQQLSKIHNSSLTTTHSARNLGFIFDEHLTFSDQISALSKSCYYHIRELRCIRPYLDFKTASTIATSIVHSK