Scaffold Ga0209149_1083981

Overview

Basic Information

• Taxon OID: 3300027626
• Scaffold ID: Ga0209149_1083981
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2547
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002668	Metagenome	538	Y
F017238	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209149_10839811	F002668	GAG	MSNGVFNFNFLALLLTEILGGPKFTLGGPTPPGRPLAEKFLCPMRVLHNI
Ga0209149_10839812	F002668	AGG	MSNGVLNFNFLALLLTEISGGPKFTLGGPTPHGRPLAEKFFYPKRVLHNI
Ga0209149_10839813	F002668	GAG	MFNGVFNFNFRPLLLSEILGGPKFTLGGTTAPGRPLSEKFFYPKRVLLNI
Ga0209149_10839814	F017238	AGG	MSNGFFNFNFLALLLAEILGGSQIYTRRPYAPWTPISGEIFLSKASTTQCLIVFLISTF
Ga0209149_10839815	F002668	GAG	MSNGVFNFNFLSLLLSEILGSPKFTLGGPTAPGRPLSEKFFYPKRVLHNI