Scaffold Ga0209149_1041683

Overview

Basic Information

• Taxon OID: 3300027626
• Scaffold ID: Ga0209149_1041683
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3781
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000163	Metagenome	1825	Y
F006725	Metagenome	366	Y
F008464	Metagenome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209149_10416832	F008464	GGAGG	MQTLTSIRRRGWSGRIASLPLSFFFFLVFLGKATGRTVRPIWTNEGSKRVVPLREVPFGGMNDVPLNFGGKIPQKLKFWGRE
Ga0209149_10416833	F000163	N/A	MTSRGLTSGFNFCSRGHLCMALMRLPMKFGADIFIQSGVIDIFRKLKMAAAAILDLFG
Ga0209149_10416834	F006725	N/A	MAAVAILNFGKMSMTGLDKDISHRIIIIWEDAPRRRGDDNVTKSRNQKLIRVKSSNESLKHMCVDLSEYNRYLNRIWYMTQIPHCQHAGMAKFT