Scaffold Ga0209149_1012930

Overview

Basic Information

• Taxon OID: 3300027626
• Scaffold ID: Ga0209149_1012930
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6179
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002668	Metagenome	538	Y
F021203	Metagenome	220	Y
F021428	Metagenome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209149_10129301	F021203	N/A	MFFFNFNYLALVLSGILGGFQINIRGPCAPRMPPSGKMLTCAQVLACVYIIVNFQLRSSIHAGLTERSLYNRFALKKNLPKWGFGDFWVRG
Ga0209149_10129304	F002668	GAG	MSNGVFDFNFLAPLLSEILGGPKFTLGGHTPPGRPLAEKFLYLKRVLHHI
Ga0209149_10129305	F002668	GAG	MSNGVFDFNFLALLLSEILGGPKFTLGGPTPPGRPLAEKFVYPKRVLYNI
Ga0209149_10129306	F002668	GAG	MSNSVFNFNFLALLLSEILGGPKFTLGGLTPLGRP
Ga0209149_10129307	F002668	GAG	MSYGIFNFNFLALLLSEILGGPKFTLGGPTPPGRRLAKNFLYVKRVLHNI
Ga0209149_10129308	F021428	GAGG	MSNGVFNYNFLAHLLSEILGGPKFTVGALPPWTPSSGEIYVPKVSTSQYLIVFLISTF