NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209789_10023922

Scaffold Ga0209789_10023922


Overview

Basic Information
Taxon OID3300027624 Open in IMG/M
Scaffold IDGa0209789_10023922 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1953
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029988Metagenome186Y
F037061Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209789_100239223F037061N/AMVILLCYTPAFNEVIYTDFYAKIRDXNFRLVDKNSRILVFFFVSKLNFSFSFRFVNENYEIFVVVVVFVTNINLFSSTKIFVFVVVDEKNTGM
Ga0209789_100239224F029988AGGMDDDAKAKMILMAPPPDNWKRPPGRHHITWLNIIQPDLTAYNLTPNEAVDLTQKPPSVEADASHGVTHS

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