Scaffold Ga0209753_1030777

Overview

Basic Information

• Taxon OID: 3300027622
• Scaffold ID: Ga0209753_1030777
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1601
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008625	Metagenome / Metatranscriptome	330	Y
F013899	Metagenome / Metatranscriptome	267	Y
F015350	Metagenome	255	Y
F032036	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209753_10307771	F008625	N/A	EVTEISGNRLVWRHIQKENQRMILDPLGYDALKDIDEINSRNRRKTDDPYIRATIENADHKRWKNNLAERR
Ga0209753_10307772	F032036	GGAG	MKWIILVYLTIAAGTTEGDIRYTRLEHPTKDFQECIDIEQQINDIIHRGRESETKYVRFLYWEYKNMLHEIKAECIYADSPVSNPKWFSEK
Ga0209753_10307773	F015350	N/A	MKKVVKWLIIIMMAILMGWQYDAIQKNFHEIESRIKKFESVDLFNHVESVDILNEKQMELQALEKEIKEKFVIQERELRAQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK
Ga0209753_10307774	F013899	N/A	LSASINSLFPDTCAIEEGKTGQFELFQSGKSFMSAGHGKFFDLEDVKKKLTESGQDLFTN