Scaffold Ga0209753_1022375

Overview

Basic Information

• Taxon OID: 3300027622
• Scaffold ID: Ga0209753_1022375
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1989
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011620	Metagenome / Metatranscriptome	289	Y
F019388	Metagenome / Metatranscriptome	230	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209753_10223753	F011620	GGA	MFDKILQVVLKFFGKKTPEPPTEENNESLEALERVEALDKIGESS
Ga0209753_10223754	F019388	AGGA	MRTPNEQNPYLVETKNGQILKFNKIDADNEAVNKQLDGDDVEVFHDGKLQYKLHGIEQGKLF