Scaffold Ga0209753_1017679

Overview

Basic Information

• Taxon OID: 3300027622
• Scaffold ID: Ga0209753_1017679
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2330
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F010477	Metagenome / Metatranscriptome	303	Y
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209753_10176792	F010477	N/A	MKLRYMIFVPYLIFIGIMGGNVLVDALVIGLALAMYDFLFDGGGGGRPA
Ga0209753_10176793	F069325	GAG	MSICSNCYRSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPVAMFGKSKKVTKGLTALTDKQFGI
Ga0209753_10176795	F004843	GGA	MKWMFIIIIAVALSLISGCADTADAEDSTATTPAEQQEANERSDLASGDTVWIAIVMTWNPVNYTIDKEFSSELDCWNYYDTGAGESKMLNSYGTQVLDHQGNKPDKEYMKKHRPAHREYPTRMYKNNGDWMVWLTCDIKGRNEGL