Scaffold Ga0209753_1005238

Overview

Basic Information

• Taxon OID: 3300027622
• Scaffold ID: Ga0209753_1005238
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4906
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F002348	Metagenome / Metatranscriptome	568	Y
F008155	Metagenome / Metatranscriptome	338	Y
F018198	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209753_100523811	F000615	GAG	MCRLRLFYECSDGTMGFAEHVMRYEEDIASFIKHWKTGGRMVITEHIDLV
Ga0209753_10052384	F008155	N/A	MTPEHQQLAALVYDIGMKKQIEERVKAKYLKRIEHLVGANNELMYELEQRELELVTIESELVTVEKECYGRGV
Ga0209753_10052385	F018198	GAG	MTDKKNLATVRIYINGKEMLYSHQNMVAAINSFLPYLTNDDLDEMMKTFATLKDHRRQKEYLAHLEAKVIPIQKNRHDT
Ga0209753_10052387	F002348	N/A	MKPTEKWMKYGGWILSLTAIVIGASFLWPHFHVALLGFALIYLGVRIFNFSTFEEYREKRIKLLHKLMD