Scaffold Ga0208951_1031672

Overview

Basic Information

• Taxon OID: 3300027621
• Scaffold ID: Ga0208951_1031672
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039943	Metagenome / Metatranscriptome	162	Y
F065418	Metagenome	127	N
F067397	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208951_10316723	F039943	N/A	MKEILKGSSLNEHRQEKEYGWKPIPGKKKPEKKSSEYTYAFIGIIIGLSFGIMTTIFMYRDAERCNLLLEENKLLKEMLYYRDINPMETP
Ga0208951_10316724	F067397	N/A	MGKMKDLYYELLQANNGEIPQEATIADLARMNDLKIYEWREYERSQNHVKKPKNERNIEGQQS
Ga0208951_10316725	F065418	N/A	RPMLDKRNYLIAILYYKFGYTEEKIAAIFNINRTTVSVSKLHTYSLLDYGDSVFKENINDYLINYPYAFPSFTNRYKKDIQITISVDTKIIKKLRAYRDIVNEKTIANAVKRLVTNGLNLWEK