Scaffold Ga0208951_1009028

Overview

Basic Information

• Taxon OID: 3300027621
• Scaffold ID: Ga0208951_1009028
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3410
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024058	Metagenome / Metatranscriptome	207	N
F037078	Metagenome / Metatranscriptome	168	N
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208951_10090282	F037078	AGGA	MKNQLNITKQSFGDTTAFLLEGGKGRITSFHNALYNWGATNGQLHDMGNGKAFYFYAQPDAVLHALVKIALHSLCNKINAKGMKGGLMSLAKIKAQGQFDNIIDGRFLRTSVSNDTYGFGTITAEKPSDYCGAVSSGRE
Ga0208951_10090286	F056412	N/A	MNKRLTKYEILIANLEKASADLKKANEETAKRIDQIFEKYQQKVSLAHHNCMMVNEKQIEEIACDSSEVC
Ga0208951_10090288	F024058	N/A	MNKMINWNFHRRQMRENMRKNMDTTESIITNSNNTPTYFGEVYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLTNASLVQKESK