NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208951_1005016

Scaffold Ga0208951_1005016


Overview

Basic Information
Taxon OID3300027621 Open in IMG/M
Scaffold IDGa0208951_1005016 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4892
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F049419Metagenome / Metatranscriptome146Y
F082109Metagenome / Metatranscriptome113Y
F096610Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208951_100501610F049419AGGMKFPKFDYLNLATTYILFGLIYGTIVALVWNYLFESVSNIHLSILQGFGIHLITRILFGNTNTNYVSNFYTPKAPDLDKIDSYLKEMQADLDKEADEVERRYEDLDKKD
Ga0208951_100501612F096610N/AMANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHARHWRSFDKRKLTSKLRASDLLTK
Ga0208951_100501615F016774N/AMPPKKNKIIINQEQLDSLNHWREQILKMEKSYYSKDVEKERTCRNMINKYLDDVLECNKNIKEKSKK
Ga0208951_100501617F082109N/AMWTPIEIFVLTFLLNHSPMASERLSVKEVIQNREAQSLIESVGLRNDF
Ga0208951_10050163F036564GGAGMKLGRICVDLNYIVDMDNDDMVAHATEALYEDLMQGVKYGDLANWIRISEDKDAKEDMIPEFLLEEKND
Ga0208951_10050165F044916N/AMTKRKSKIEKSLDKEQKTFALMAKKIIDAIKDEKELRAFAKTSLEILYKDNPNLFSDHAKLKLKKK
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Institute for Fundamental Biomedical Research
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