Scaffold Ga0208951_1004267

Overview

Basic Information

• Taxon OID: 3300027621
• Scaffold ID: Ga0208951_1004267
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5414
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F025679	Metagenome / Metatranscriptome	200	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208951_100426713	F011914	N/A	MITNNQIKAMSENELAYLYYALNTEWTSLNMGYDFDWYILKAFRNNTIHKLLNKYSANLTDENKGIIIEILKKLEANI
Ga0208951_100426718	F071966	N/A	MSLLGIAFDIKGWIFRPFYLLLGVLYFILLLTLLGTLYTILFIRTTLEKTIKDIEKERNKYKRK
Ga0208951_10042675	F025679	AGG	MTKTFKIGEYAVGGTIRVSIPKTLTTIKIDVIDSNFKTKKLLNQYIYYSFDRNRIDRDLFQITSGYWSDKILEYISKTMKQSGEWIGNYHTKRLFLDRAI