NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208951_1002465

Scaffold Ga0208951_1002465


Overview

Basic Information
Taxon OID3300027621 Open in IMG/M
Scaffold IDGa0208951_1002465 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7550
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F005814Metagenome389Y
F006463Metagenome / Metatranscriptome372N
F009958Metagenome / Metatranscriptome310Y
F034772Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0208951_100246510F034772N/AMKNLINYFTPVTDEHKSFLRHFLSTLTMFILLGGMFYCLMYLKAL
Ga0208951_100246511F009958N/AMKNRNLELWNRGWQLTYEFTGWEYSIAGTWEFNDYEEVSEWAFIEIDVDVSEKWIIETDDHLQPHVLSVRFLEDIRLEMQEIINSDLLNYDFWEWKASNDESNYNFYHEL
Ga0208951_100246512F006463N/AMKAGTIYDQLDWWQRQDRGSFDLHLYLEICRIKKNEQTKFKEMKRYKATFKTWAYVGAPVKLETRIVEAYDVQHVKNLIQKNDDIIIEIKQIEQ
Ga0208951_100246518F005814N/AMELELLSSRINLNHTCLKLQVSIKDIKTKHPNRTDLISSMEQSLHEIKKAMVIYEHLEKEFRVTRQINFDLQHINLELKQEVKDLKKIIEFNDEEL
Ga0208951_10024656F001808N/AMAKLFIVIISILLYSCSSQYHLNKAIKKGYKCEETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIKYNTVYVPKTRIQLKREFKLKIKTIYKDRIVEKAQAKAEGKKNRPKGNLNLLFVGVGIGLLLSYLWKYAKQSLI
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