Scaffold Ga0208951_1000344

Overview

Basic Information

• Taxon OID: 3300027621
• Scaffold ID: Ga0208951_1000344
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21163
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004816	Metagenome / Metatranscriptome	422	Y
F009252	Metagenome	320	Y
F023523	Metagenome / Metatranscriptome	209	N
F029658	Metagenome / Metatranscriptome	187	N
F051731	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208951_10003443	F029658	N/A	MNFGRAIGLFNRVAPKITRGIGQVSHIARNVGQAIGNVRNIGSTLNSMSGGRIGDSQFGRKMQEITNKIESGADFVANNEDKAQGLINDVSRKFNA
Ga0208951_10003444	F009252	N/A	MDKINIYINSKNRSENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIEGFNNMFQIIMYDVNDNITSIFDYRLQDGNPNVNDVRTNLNVLLLNKVVIQYDRIRNKFIYKRTLPITTDNFKMYLKIINSEDFLGFYKSDRNKLILLPYFNNIYSNSIVNISGDEAIIIKISGDCILSGNTVDNFGLTTYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRIANIEQITYFELSVHNQDDEFIPSFSDYILLLQFIRHTTEENKINSLLESILDYIKQIYLIISQIVFPPS
Ga0208951_10003445	F004816	N/A	MKFIKYKQVARITFYGFDDLYRDNNSSVFTEPLNSVYYTQNINAGVQVGNNAKRMRFQIQGLDNVKLSEHARFCIESINVPILYDNIDDRKSLGQTIVRMSNLSSINCFDTHGKGNTDPVIFTAQTHPYQQRLGTVTNNVIYGNTESSPVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFMPGDSITLTDDQEYFDLFHISFIVYDLDEEELLLTSTQNINFEKLGETLPRKINNIR
Ga0208951_10003447	F023523	N/A	MISEENLSEWNNKPVKFSSVIYPQSKDNNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEGIEIPQRIILICSTAHSDSNRVFKSLKNLNWDDDVIEDYNDSLLSAKMEELKYDLEHAKEYKLYKVVYKKFKECKDIDELNDDEMKLLYKFNFVKFQDLEKPKYPEGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFISKEQFKDLYDYATDEAYNALVIDATKGRPIFKKNFESILKIN
Ga0208951_10003449	F051731	N/A	MMNTFEHNRNILKSINNFNLLEKTRYEAPRDIKQTTFSNPLPKQRHHKIIDNNKMNNPYIGIAHIDYVKKDTPPYYGLHETGSKSISYEDFFKVK