NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209330_1040510

Scaffold Ga0209330_1040510


Overview

Basic Information
Taxon OID3300027619 Open in IMG/M
Scaffold IDGa0209330_1040510 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1062
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013218Metagenome / Metatranscriptome273Y
F024377Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0209330_10405101F024377N/AELADNGQIRSCIFGESWSKSEEETWRLLRSHPALKSDCDLGRRNQGITIVVL
Ga0209330_10405102F013218N/ALGVFVEMLVRPEFGPTAASAIPAICFAALFFVFTVLFLPGVFLGYASNYRLPRDEFFRACGRNLWRFIRLLIVAGVVMGIVAGILFAIRGALVKAAGESTNELLGFEVSVACLLVIFLAMTTLRIWFDLAEADVVLSDRNAVRKSIGAAFRHTFRHLGRLLASYVVTAIVAAIILLAGIWLWRHGVAPDRVGRALLVSQFTLFLLLIPRFWQRGIAVAYWQREMIVHTVPPLAPAPVTLPSGVVASTAPVV

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