Scaffold Ga0209330_1000510

Overview

Basic Information

• Taxon OID: 3300027619
• Scaffold ID: Ga0209330_1000510
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15921
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015895	Metagenome / Metatranscriptome	251	Y
F047797	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209330_100051010	F047797	GGA	MEILWPILGICVLVCFVFFILAQHWQRVLRHQNGTIRRLNERVRTLEEVDDPEFRRRLGESAPPPLEQIFTFSFRLSEQFWRETLHTTEENSSFIRAFGSFLGSVKIERWRGHSVATITEVLPDRRSAVWQSRTLDCFLDAQSGPDKLTLWELPLARIGRSNERPASLELLLKEKSVELCAHLFAMPGSNGHSNISGTNEIVFFRVPLDSTELSEFRSDDPLENADRPESPLNQAFWRTFYSHRDEDVGFEWQLSVLDLNKKGEWDRWKILEPEVDHSSQNVPQKRS
Ga0209330_10005107	F015895	N/A	MLIASFILVISVAAMIQFAVFSWRASLLRTVSEPLTHEADGTREPCLNLFSSSSFQEVLAVYRDLCPDLSAGTTSNLRSVSLYYGTMRLLSRLGSFLSPAPGTGWTQREMALCTQYATVRLTQRLERNVALVNEARSYR