Basic Information | |
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Taxon OID | 3300027619 Open in IMG/M |
Scaffold ID | Ga0209330_1000104 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40910 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (85.37%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000249 | Metagenome / Metatranscriptome | 1459 | Y |
F001709 | Metagenome / Metatranscriptome | 648 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209330_100010428 | F001709 | GGA | MPQEVSVSYQAIKSKVYRLIDTLVVGDKSEVEVQESIRRWWELIHPADRPIAQKYLHLILERSCTALDAIEEGLTDATNHEATRTSDPAKAFKLVERVVKQTSKHAALSSSI |
Ga0209330_100010429 | F000249 | GGAGG | MKSLAWILVLPVLICSLGRAQTSASASASPDSGRGERMFFPRDMFWGWGQFDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGEFRRFMLFGAPSFLFGKTIPQTLYTWSPDAIGIEHSWGIGIFIAKGFEFRMTQHFLFDRLGARDKNLGPADQGNNGPWGRYLTVGVRKSFGTRRW |
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