NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209678_1035812

Scaffold Ga0209678_1035812


Overview

Basic Information
Taxon OID3300027615 Open in IMG/M
Scaffold IDGa0209678_1035812 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae ELBA.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2088
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Mytiloida → Mytiloidea → Mytilidae → Mytilinae → Mytilus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011565Metagenome289Y
F023283Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0209678_10358123F011565N/AMHKVYDMSTSPPYAKDLGNLLYHSAVVGGLSVGYSMVGKRLLKMKPADLGRLGVEDSAKLVGTVALALWT
Ga0209678_10358124F023283N/AMMVGGAVVNALAFTGGNYLFSLLGRSAEAEKERKRHDLAIEELQRAESEYRHKRQLRLDYLNQQLRAEQHSVQVFEDVDAAAREYWLVTGGDQEKLHKAPDAGAEPTLNEYYELSASQKE

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