Scaffold Ga0209037_1083187

Overview

Basic Information

• Taxon OID: 3300027612
• Scaffold ID: Ga0209037_1083187
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 784
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023086	Metagenome / Metatranscriptome	211	Y
F038091	Metagenome	166	N
F101904	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209037_10831871	F023086	N/A	NTQYTNAVIAAIESFARIIAYCAHDSVVENNDYAIADSVDSINFLYSNYTKYDNVNCLANAALDSSLDTVVRENIHAQLV
Ga0209037_10831872	F038091	AGG	MQRITNTNTLIVVDPIMSPLFTAQLITVSSYNKLNAQTQQDISVVAYSKQAYSNAMSQSYNAQANAYVVYNVTNNLSYNRCVVTH
Ga0209037_10831873	F101904	AGGAG	MRNLQVHYTYKTKNATVQDHCIVQSKTTRFSKTQQLNTQLKLATQLNLKHFYAVT