Scaffold Ga0209037_1020079

Overview

Basic Information

• Taxon OID: 3300027612
• Scaffold ID: Ga0209037_1020079
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1677
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F053969	Metagenome / Metatranscriptome	140	Y
F081202	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209037_10200791	F001588	AGGAG	MQNTNYVFLNAADAAIVVSVNKVQVAAVYTAAQLAAVFKQHNINVLTDTIMCSSSIDFAEEEGFATDNCAHNIIEAAL
Ga0209037_10200792	F053969	GAGG	MQNTTTTDTLTQVEKAFIVNFLANTFAGLTDNNTESLLEALEPAEAQYFAESYFVRLQDAQEVLDNLQMLYATAEQEPARFTFTIAQAAAAIVSYDTEYRECIIEQLEYACTEDLQRFYPAFANANCKQTNFATLVERLCDNY
Ga0209037_10200794	F081202	GAGG	MQNTQIFNYTSNDRYTVIGTHYTGEQMDGCAMFDCVILDTHEGDVYVQENCMCMNCALLQTEGVSDCITYKQYKQNN