Scaffold Ga0210059

Basic Information
Taxon OID	3300027611 Open in IMG/M
Scaffold ID	Ga0210059_1035653 Open in IMG/M
Source Dataset Name	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027611 Open in IMG/M

Scaffold ID

Ga0210059_1035653 Open in IMG/M

Source Dataset Name

Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5707
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5707

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Ecosystem

Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location Name	Key West, Florida, United States
Coordinates	Lat. (^o)	24.5512	Long. (^o)	-81.8083	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Key West, Florida, United States

Coordinates

Lat. (^o)

24.5512

Long. (^o)

-81.8083

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F025610	Metagenome	201	Y
F042618	Metagenome	158	Y
F061343	Metagenome	132	N
F067192	Metagenome	126	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_10356534	F042618	N/A	MAKFGKFSPSRSFPDLNMAMMSSPILPTITRDPRIRDPWNFQERNTESLPPFPEEYAHHTAVQTAPYPEFVQTPDTGEIKTPIGKYATLRPAKLSFSPQSTSSKSKGMNRASSCLMYPTHQAFKQNQPQIEDIHTIFASPLLQEHLHYLLMDHDLDDKKISECLKYLGIPKCLFIQYINRVYPQHFYTILSNLNGYTQ
Ga0210059_10356535	F025610	GGA	MKQQFAHTATTLESIIGHPDIVVPIREAVQPTTNTRLLKETEHFFRLHELPLIFGFKKLKIFHIKSDNFKNNSRYILIYGYNGDKDKLAFNCVQKTDFMTDVLLQVGTKCQ
Ga0210059_10356538	F067192	N/A	MQKNIMEMETDSINYEPPAKTVKIDVQQYPSLYVKLHLTGLFDIQQAQSVIHSEPSKQRDVTPLLFRQMAFNLSFVAISEEEYIMINKSIREIMGWKPYKIPYLQLFVKNSLLRRAILNRSSMILASFAELPPCCIGIRIVANKRNEEYMQKHHVTVLRRIIWNFILTELDPIPPYVRMFLATELKLIAYQDTPTTPPTSSDHQTMANKKPQKSQVKT
Ga0210059_10356539	F061343	N/A	MDLAQFCQVLNKVSHNEVNKENVPPTEPAAPREQPTQSNDQQVPYPWGWLRKQIPVIQDAIIKYSTNRSLINAYKFWDIDSDTYVVEHDYINTFIAKMTLYQAMFLNQIQIPAIIILVPSSDEQFKLLFRISTFLAKYDDLSPCVFHLQIQPENAPKPPDSALHAHRQIVSLILFNAPLLPKSVLLKMREFLAALEIFTENNSANNPPTNPFTQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210059_1035653

Overview

Ecosystem & Geography

Associated Families

Sequences