Scaffold Ga0210059_1026890

Overview

Basic Information

• Taxon OID: 3300027611
• Scaffold ID: Ga0210059_1026890
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7311
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040389	Metagenome	162	Y
F063158	Metagenome	130	Y
F096189	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_10268905	F040389	GGA	MLSLFLLQQIWIGIDYFLLNFIATFGSLLGLQVTAGPQVNSGLQPPTRWKPFVAGTLLRRPEPTKETVQQMILSIIAIAITHLTRFTLLLLLRIQRYMWRNHVATWA
Ga0210059_10268906	F063158	N/A	MHDFMKLHHNCDTCMDVQKERKSTFLTAFDHREKRLAACMLHYIFIAVVSECLCHLGAQYPVQLPDICIG
Ga0210059_10268907	F096189	N/A	MLLCACAHGVKSEISLDTGDAASNPVVKRSVLSVFVKQRCAQCVFLYYGLSVCGQKYIIIICDRFQKSCTTVE