NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1026890

Scaffold Ga0210059_1026890


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1026890 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7311
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040389Metagenome162Y
F063158Metagenome130Y
F096189Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_10268905F040389GGAMLSLFLLQQIWIGIDYFLLNFIATFGSLLGLQVTAGPQVNSGLQPPTRWKPFVAGTLLRRPEPTKETVQQMILSIIAIAITHLTRFTLLLLLRIQRYMWRNHVATWA
Ga0210059_10268906F063158N/AMHDFMKLHHNCDTCMDVQKERKSTFLTAFDHREKRLAACMLHYIFIAVVSECLCHLGAQYPVQLPDICIG
Ga0210059_10268907F096189N/AMLLCACAHGVKSEISLDTGDAASNPVVKRSVLSVFVKQRCAQCVFLYYGLSVCGQKYIIIICDRFQKSCTTVE

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