NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1024549

Scaffold Ga0210059_1024549


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1024549 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7869
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025610Metagenome201Y
F042618Metagenome158Y
F061343Metagenome132N
F067192Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_10245493F042618N/AMAKFGTFSPSRSFPDLNMAMMSSPILPKLSRDPRINDPWNVQDRNTASLPPFPQEYAHQTAVQPAPYPHFIGTPDTGEARTPFAKYTTLRPAKLSFSPKPTSSKPKGINRASFCLMYPTHQACQQNPLQIEDIQTIFASPLLQEHLHYLLMDHEQDDKKISECLKYLGIPKCLFLQYINRVYPQHFYTILSNINGSAQ
Ga0210059_10245494F025610N/AMNIIKRLRRRETTNTKQQFAHTATTLESIMGHPDIVVPIREAVQPTTRCRLLKEIEYFFRLHELPLIFGFKNLKIFNIKNDNFKNNSRYILIYGYNGNKDNLAFNCSHKTDFMTDVLLQVGTKCE
Ga0210059_10245497F067192N/ALIFINLVYTKYSMEMETDSIYYEPPAKTPKTVVQQYPSLYVKLHLTGLFDIQQAQSIIRSEPSTRRDAIPLLFQQMAFNLSFVAITEEEYVMINRSIREILDWKPQKIPYLQLFVKNSLLRRAILNRACTLLSSFAELPPCCIGIRIKSNKGKEEYWQKHHVTALRRVVWNFILNELDPIPPHVRMFLSTELKLIANQEIPTSPVTSSYHQTMANKKPQKSQVKTLSY
Ga0210059_10245498F061343N/AMDLAQFCEVLNRVSRTEENKENVPPSVPTAPKEQPTQSNDQRVPYPWGWLHKQIPFIQDAVIKFSTDRGLVNAYKFWEVDSDTYIVEHDYINTFIVKITLYQAMFLSHIQIPAIIILVPSSDEQFKLLFRISTFLAKHDDLSPCVFHLQIQPETAPKPSDNVLHTHKHIVSLVLMNAPMLPKSVLTKMREFLVALEAITEKSSENNPPTNPLA

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