NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1021195

Scaffold Ga0210059_1021195


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1021195 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8837
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013591Metagenome270Y
F014682Metagenome261Y
F081871Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_102119510F013591N/AMLIIKRGYQRKYQVCGSGIFSKLKDFLSGFISKKQVVDTALNIARSAWQKAGQKAIDFPSSKLTPKSQQILLKLVSPEPSLAPQGSTPQKAQQVTSNLNNLIAGSGSARSRFKTLSDG
Ga0210059_102119514F014682N/AMSNEKQSLGIKSSTVTAFLNDKLTPEQCKELQKIMNHDPKLCGKVSIYRG
Ga0210059_10211956F081871N/AMKTSRQTMISVLKENTKGLTRMNQKLMWKIIEEKGLVDQALELEKGVKRKPGSGRIPRKSVEVVDLDTNETKYFLSLSEASKYFGKTKIYFICNNGRVWENKKITIINH

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