Scaffold Ga0210059

Basic Information
Taxon OID	3300027611 Open in IMG/M
Scaffold ID	Ga0210059_1019523 Open in IMG/M
Source Dataset Name	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027611 Open in IMG/M

Scaffold ID

Ga0210059_1019523 Open in IMG/M

Source Dataset Name

Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9423
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9423

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (41.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Ecosystem

Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location Name	Key West, Florida, United States
Coordinates	Lat. (^o)	24.5512	Long. (^o)	-81.8083	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Key West, Florida, United States

Coordinates

Lat. (^o)

24.5512

Long. (^o)

-81.8083

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F025610	Metagenome	201	Y
F042618	Metagenome	158	Y
F061343	Metagenome	132	N
F067192	Metagenome	126	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_101952310	F042618	N/A	MAKFGIFSPSTSFPDLNMAMMSSPILPKLSRDPRINDPWNFQERNTASLPPFPQEYAHQTAVQPAPYPNFIATPDTGEAKTPIAKYTTLRPAKLSFSPKPTSSKPKGINRTSFCLMYPTHQACQQNPLQIEDIQTIFASPLLQEHLHYLLMDHELDDKKISECLKYLGIPKCLFLQYINRVYPQHFYTILSNINGSAQ
Ga0210059_10195234	F061343	GAG	MDLAQFCEILNRVSRTEENKENVPPSVPTAPKEQPTQSNDQRVPYPWGWLHNQIPFIQDAVIKFSTNHSLVNAYKFWEVDSDTYVVEHDYINTFIVKITLYQAMFLSQIQIPAIIILVPSSDEQFKLLFRISTFLAKHDDLSPCVFHLQIQPENAPKPSDSALQTHKHIVSLVLMNAPMLPKSVLTKMRQFLVALEAIAEKNSENNPPTNPLA
Ga0210059_10195235	F067192	N/A	LIFINLVYAKHSMEMETDSINYEPPTKTPKIVVQQYPSLYVKLHLTGLFDIQQAQSIIRSEPSTQRDAIPLLFRQMAFNLSFVAITEEEYVMINRSIREILDWKPQKIPYLQLFVKNSLLRRAILNRACMLFSSFAELPPCCIGIRIKSNKGKEEYWQKQHVTALRRVVWNFILNELDPIPPHVRMFLSTELKLIANQEIPTSPVTSSYHQTMANKKPQKSQVKDFIIIKFFLFTITKTRLNLFICRLKQLHYNKTP
Ga0210059_10195238	F025610	N/A	MNIIKRLRRRETTNTKQKFAHTATTLESIMGHPDIVVPIREAVQPTTTSRLLKETEYFFRLHELPLIFGFKNLKIFHIKNDNFKNNSRYILIYDYNGNKDNLAFNCSHKIDFMTDVLLQVGKKCE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210059_1019523

Overview

Ecosystem & Geography

Associated Families

Sequences