NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1017396

Scaffold Ga0210059_1017396


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1017396 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10250
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028033Metagenome193Y
F106075Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_101739611F028033N/AMPNLSFHGQREFTTGLQLQQNVQNHTATSNCCLMRRQVKAKGAVIALILDCKYSSFEQKL
Ga0210059_10173962F106075N/AMDLQGIQSLVLTLGNGQIWLGTPPVVLQIILVFFHFVVCHCLFAKHMDSHSDVGKMTECF

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