Scaffold Ga0210059_1017396

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210059_1017396

Scaffold Ga0210059_1017396

Overview

Basic Information
Taxon OID	3300027611 Open in IMG/M
Scaffold ID	Ga0210059_1017396 Open in IMG/M
Source Dataset Name	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10250
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location Name	Key West, Florida, United States
Coordinates	Lat. (^o)	24.5512	Long. (^o)	-81.8083	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028033	Metagenome	193	Y
F106075	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_101739611	F028033	N/A	MPNLSFHGQREFTTGLQLQQNVQNHTATSNCCLMRRQVKAKGAVIALILDCKYSSFEQKL
Ga0210059_10173962	F106075	N/A	MDLQGIQSLVLTLGNGQIWLGTPPVVLQIILVFFHFVVCHCLFAKHMDSHSDVGKMTECF

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