NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1015770

Scaffold Ga0210059_1015770


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1015770 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10986
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025610Metagenome201Y
F042618Metagenome158Y
F067192Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_10157703F067192N/AMETDEISCQPPTKIMKIEVHQHPSLYVKLQFTGLFDIQTAQSVIHSKPSQQRDKIPLRFRQMAFNLSFVAITEEEFVAINKSIREILDWEPQQIPYLQLFVKNASTRRAILNRSSMLLASFADLPPCCIGLRIVSNKRDEEYVQNHHVTELHRILWSFIVNELNPIPPHAQIFLSTELRLMTNQDISSTPATHSDQQTKANQIPHKPQVKSYS
Ga0210059_10157705F025610N/AMNIVKRLRCRETTNVKQQFLYTATILDSLTGQPDIVVPIREFIQPTTLSRLLNAMESFFRCHNLPLSFGYTHLKLFHIKNDKFENNTRYVLIYGYTGDKSELDFNDAHKSDFMTDVSLQVGTKCA
Ga0210059_10157706F042618N/AMAKFGKFSPSRSYPDLNMAMMSSPILTKHQRDPRLCDPWNVQERQTSSLPPFPEEYAHQNAIQPAPYPHFVGTPDTGEAMTPIAKYTTLRPAKLSFSPHPAYAKVKSNNQRPERSSYCLMFPTHQAIQSNSLQIEDIQTIFASPILQEQLHYLLMDHSLDDTKILECLKYLGIPKCLFLQYINRVYPQHFYTILSNLN

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