NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1013491

Scaffold Ga0210059_1013491


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1013491 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12216
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042618Metagenome158Y
F061343Metagenome132N
F067192Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_101349110F042618N/AMLQTNMAKFGKFSPSKSYPDLNMAMMSSPVFTKQPRDPRLCDPWNGQARQTSSLPPFPEEYAHQSAIQPAPYPNFVGTPDTGEAVTPIAKHIALRPAKLSFSPYPTKAKAMPNSQRPERLSYCLMFPTHQALQNNLLQIEDIQTLFASPILQENLHYLLMDHSLDEAKISETLKYLGIPKCLFVQYINRVYPQHFYTILSNFNGSTK
Ga0210059_101349114F067192N/AMETDSINYEPPTKVAKIDVQHYPSLYVKLHLTSLFDIQQAQSIIRSEPSTQKDATPLLFRQMAFNLSFVAITEEEYIMINKSIREILDWKPQKIPYLQLFVKNSLLRRAILNRACMLLSSFAELPPCCIGIRIKSNKEKEEYWQKHHVTALRGAVWNFILTELEPIPPHVRMFLSTELKLIANQDILTSPITSSYHQTMANKKPQKSQVKILL
Ga0210059_101349115F061343N/AMPTAPNEQPAQSKDQRVPFSWGWLRKQTPFIQDAVIKSSTDRNLVNAYKFWEIDSDTYVVEHDYINTFIAKITLYQAMFLSQIQIPAIIILVPSSDEQFKLLFRISTFLSKHDDLSLCLFHLQIQPENAPKPSDRALHTHKHIVSLILINAPLLPKSVLVKMREFLVALEAITENNSEHNPPTNPFTE

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