Scaffold Ga0210059_1013491

Overview

Basic Information

• Taxon OID: 3300027611
• Scaffold ID: Ga0210059_1013491
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12216
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042618	Metagenome	158	Y
F061343	Metagenome	132	N
F067192	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_101349110	F042618	N/A	MLQTNMAKFGKFSPSKSYPDLNMAMMSSPVFTKQPRDPRLCDPWNGQARQTSSLPPFPEEYAHQSAIQPAPYPNFVGTPDTGEAVTPIAKHIALRPAKLSFSPYPTKAKAMPNSQRPERLSYCLMFPTHQALQNNLLQIEDIQTLFASPILQENLHYLLMDHSLDEAKISETLKYLGIPKCLFVQYINRVYPQHFYTILSNFNGSTK
Ga0210059_101349114	F067192	N/A	METDSINYEPPTKVAKIDVQHYPSLYVKLHLTSLFDIQQAQSIIRSEPSTQKDATPLLFRQMAFNLSFVAITEEEYIMINKSIREILDWKPQKIPYLQLFVKNSLLRRAILNRACMLLSSFAELPPCCIGIRIKSNKEKEEYWQKHHVTALRGAVWNFILTELEPIPPHVRMFLSTELKLIANQDILTSPITSSYHQTMANKKPQKSQVKILL
Ga0210059_101349115	F061343	N/A	MPTAPNEQPAQSKDQRVPFSWGWLRKQTPFIQDAVIKSSTDRNLVNAYKFWEIDSDTYVVEHDYINTFIAKITLYQAMFLSQIQIPAIIILVPSSDEQFKLLFRISTFLSKHDDLSLCLFHLQIQPENAPKPSDRALHTHKHIVSLILINAPLLPKSVLVKMREFLVALEAITENNSEHNPPTNPFTE