NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1013024

Scaffold Ga0210059_1013024


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1013024 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12486
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028033Metagenome193Y
F077918Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_101302410F077918N/ALLAELLHWLPFDFSVLYVSFERWVLSDFEEITGTISGKVLHGLNVYFVNASIFLKVIEKFLFKKIQRHEKQKTLIEMQLNSIGNMVSKALSDDEISASEFEKITSQMTKTYRKFEEVDLEIDKLMPKKSESFV
Ga0210059_10130243F028033N/ALQISLTVPNLSFNGQRELSTGLQLQQKVQNHTAISNCCLTPRQVEAKGAVIPPILDCKYSSVEQKLL

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