NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210059_1006450

Scaffold Ga0210059_1006450


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1006450 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18801
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013591Metagenome270Y
F014682Metagenome261Y
F052936Metagenome142Y
F081871Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_100645020F014682N/AMDKSLGIKNSTVTAFLNDKLTPEQVKELQKIMNLDPKLYRKVFIYRG
Ga0210059_100645023F013591N/AMIIIKLGYQRKYQVGGSGIFSKLKDFLSGFISKKQVVDTALNIARSAKQKARQKAIDFASSKLTPKSQQILSKLVSSAFQAETPPLSSQVATPHKAQQVTTNLNNLIAGLGQRAIKIQDLVRRLNRNTYNK
Ga0210059_100645024F052936N/AMNNSEQIKNVFEKLEALKSNINQLKREIAQLKYLNRVLSYRLREIPDLK
Ga0210059_100645027F081871N/AMKISRPTMISVLKENTKGLTHMNRKQMWKITEQKGLVDQALELEKGVKRKPGSGRIAKKSVEVVDLETNETKYFPTLSEVSKYFGKTKIYFIYNNGRVWENKKITIIYH

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.