Scaffold Ga0210059_1006450

Overview

Basic Information

• Taxon OID: 3300027611
• Scaffold ID: Ga0210059_1006450
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18801
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013591	Metagenome	270	Y
F014682	Metagenome	261	Y
F052936	Metagenome	142	Y
F081871	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_100645020	F014682	N/A	MDKSLGIKNSTVTAFLNDKLTPEQVKELQKIMNLDPKLYRKVFIYRG
Ga0210059_100645023	F013591	N/A	MIIIKLGYQRKYQVGGSGIFSKLKDFLSGFISKKQVVDTALNIARSAKQKARQKAIDFASSKLTPKSQQILSKLVSSAFQAETPPLSSQVATPHKAQQVTTNLNNLIAGLGQRAIKIQDLVRRLNRNTYNK
Ga0210059_100645024	F052936	N/A	MNNSEQIKNVFEKLEALKSNINQLKREIAQLKYLNRVLSYRLREIPDLK
Ga0210059_100645027	F081871	N/A	MKISRPTMISVLKENTKGLTHMNRKQMWKITEQKGLVDQALELEKGVKRKPGSGRIAKKSVEVVDLETNETKYFPTLSEVSKYFGKTKIYFIYNNGRVWENKKITIIYH