Scaffold Ga0210059_1003487

Overview

Basic Information

• Taxon OID: 3300027611
• Scaffold ID: Ga0210059_1003487
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25190
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Ascidiacea → Phlebobranchia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072831	Metagenome	121	Y
F092853	Metagenome	107	Y
F102039	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_100348711	F102039	N/A	MTHDFLSFYIVVSKCEEWKGEAFLWSAAGDINIATPLQLSMRWDITSLVQSANLICAKNVYYSNRSKNVFLCVNSKITSNILKTCFGQSEQVWMNEKLITNFAF
Ga0210059_100348712	F092853	N/A	MLDCGSAGKFYFLSLHVNQLAPWIRCVFYGNNKLHRAKEALKQLAFAFLSYLEQGARSLSVFFYNSGRSFSGNHCLRIEDFFFL
Ga0210059_10034873	F072831	AGG	VIPAIDAELAGHADKLDMKLQSLCGNDFSLFAVRIFAKP