Scaffold Ga0210059_1003384

Overview

Basic Information

• Taxon OID: 3300027611
• Scaffold ID: Ga0210059_1003384
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25463
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013591	Metagenome	270	Y
F014682	Metagenome	261	Y
F052936	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210059_100338415	F014682	N/A	MPNEKQSPGIKSSTVTAFLNDKLTPEQCKELQKIMNIDPKLHRKVFIYHG
Ga0210059_100338418	F013591	N/A	MLVIRCGYKRKYQVGGSGIFSKLKDFLSGFISKNQVVDTALNIARSAGQKAGQKAIDFASSKLTPKSQQILSTLVSSTPLLAPQGSQQVTTPNLNNLIVGPGQRAIKIQDLVRRLNK
Ga0210059_100338419	F052936	N/A	MNNSEQIKDVFEKLEALKNNIDELKSEIEELKYFNRLLSYKLREIPDF
Ga0210059_100338435	F013591	N/A	MIVIRCGYKRNYQVGGSGIFSKLKDFLSGFISKNQVVDTTLNIARSAGQKAGQKAIDFASSKLTPKSQQILSTLVSSTPPLAPQGATPQKAQQVTTPNLNNLIAASGQRMIKIQDLVRRLNK
Ga0210059_100338438	F014682	N/A	MPNEKQSLGIKSSTVTAFLNDKLTPEQVKELQKIMNLDPKLYRKVFIYRG