NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210059_1002504

Scaffold Ga0210059_1002504


Overview

Basic Information
Taxon OID3300027611 Open in IMG/M
Scaffold IDGa0210059_1002504 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28850
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (18.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013591Metagenome270Y
F106072Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210059_100250417F013591N/AMIVIKRGYKRKYQVDGSGIFSKLKDFLSGFISKKQIVDTALNIARSAGQKAGQKAIDLAMSKLTPKSQQILSKLVSSTPQAATPQGVQQMTTPNLNNLIAGSGQRAIKIQDLVRRLNK
Ga0210059_10025042F106072N/AMMFKNTEKTENPHGNAPQTLFGAETTTPNSLKEAGLVFLLHKLVFIVSLVD

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