Scaffold Ga0209221_1049422

Overview

Basic Information

• Taxon OID: 3300027609
• Scaffold ID: Ga0209221_1049422
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007233	Metagenome / Metatranscriptome	355	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209221_10494221	F037842	AGGAGG	LKQKTVKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKANIAFSIDPELSTVKGGNIVRWRELKTRPVMRRVARR
Ga0209221_10494222	F033134	AGGA	MKPEQESKQLITFNSLHIEVLGPRELGNSQLAIRGVTEFLDGVELDVGKLLRERAEMSPILEGFRLRFG
Ga0209221_10494223	F007233	GGAG	MTSRNQKEHKRQLNLGTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD