NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209221_1014655

Scaffold Ga0209221_1014655


Overview

Basic Information
Taxon OID3300027609 Open in IMG/M
Scaffold IDGa0209221_1014655 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2049
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209221_10146552F007233GGAGMANRKQKERKRQLNVDTFSDSIKGKVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDHGLVRKIGLIPDDAPVWRPKD
Ga0209221_10146553F033134AGGAMKQEQESKQLITFNSLHIEVLGPRELGNSQLAIRDVTEFLHGVELDVRNLLRERAEQSPILEGFRLRFG
Ga0209221_10146554F037842AGGAGGLKQKTVKARGEGVEYPALISKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKARIAFSIDPELSTVNGGNIVRWRQLKTRPVTRRVARK
Ga0209221_10146556F065986GGAMSNIAKKQGRMIRKGKEVRFGSVHIDLIGPIELLHNREAKGAAVDFLRTEILASEDWLKDCARISPTLKRFRLVSIRT
Ga0209221_10146557F044617AGGAGMSTSPQPSREKGTVTAITAEERRKLDQRVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYVCIRFQDKTDFALEFNPQIVTVGTELCDSATDDFDVIRNYYREERE
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