Scaffold Ga0209221_1008450

Overview

Basic Information

• Taxon OID: 3300027609
• Scaffold ID: Ga0209221_1008450
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2635
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F044385	Metagenome	154	Y
F069867	Metagenome	123	Y
F098478	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209221_10084503	F069867	GGAGG	MPQKIHEYTEAIGKTVAKVTVTNESDWRNITVKFTDNTAIHFGIRPFIQIEPEQVDWSTGNGKILRSYPFVHEKEG
Ga0209221_10084507	F098478	GGAGG	MSKAKNSKTVDVKKAAVGDKSEPNGNGKPEKAKVVKTQTLTPANTKLVKRGFVKMFVDFVVKRGSVTIDDLAAEFAGRQVEGKKITKQRVLRYTYWCVNKGILKAK
Ga0209221_10084508	F044385	AGGAG	MLIRNNDGEIVGEMNVSITQEGTVIRTNTMYQNGRPVTQNISIRESHGEVRTTNVIGGKFLP
Ga0209221_10084509	F006757	GAG	VLPPVKGKAQMALLNLTAFREISTSDLIAMAQAMPGGTKVHIPDRLTAIVLLLGTSPTDA