NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209221_1002113

Scaffold Ga0209221_1002113


Overview

Basic Information
Taxon OID3300027609 Open in IMG/M
Scaffold IDGa0209221_1002113 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4996
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007243Metagenome / Metatranscriptome355Y
F022093Metagenome / Metatranscriptome216Y
F034727Metagenome / Metatranscriptome174Y
F079016Metagenome / Metatranscriptome116Y
F087658Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209221_100211310F022093GAGMSILKRVEFSRGLRPDSPRFVLMIEIPDSVADELNARKVSLETRAYEVALETTSADRSNKPDYQMSLMSCTPGKVKNLDSLGEPSLLAPDACRAWVIKRPSPFQELLDKGWQSRQKNPGSKS
Ga0209221_10021133F007243AGGMTTIHATVLSTERFRELYRVIVQLVPSEFVGPFERLRFKNNPYCGSFGTSVDKSWLTLDYRKDPGVKAGEAFPLRRTD
Ga0209221_10021134F087658GAGMSQALYFQITLEPHLKRSGLATGRKILFLAEVPVDLAKEASGAPEDDRMVFEAAERLAGNLTCLAMTGESSQPGEDEMRISFRSTSGMSDDAKERQPDAEKDGVRIWLVGARPV
Ga0209221_10021135F079016N/AMDSHETNGCAQELWGELIGIDDRTDQERTFTIYKRGGSLLVVSDTGCERLVGPDHGLSKTRIFQEVMYQFRVHAVRPKPSLYPLAD
Ga0209221_10021138F034727N/AMTTDEVLDALGRYKKDSKDSDRQTATKLGITNPILEDWLSGKTRPQKSTLARLAGFLRRVGYL
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