Scaffold Ga0209221_1000095

Overview

Basic Information

• Taxon OID: 3300027609
• Scaffold ID: Ga0209221_1000095
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52867
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000828	Metagenome / Metatranscriptome	872	Y
F005961	Metagenome / Metatranscriptome	385	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209221_100009530	F000042	AGGA	MKNIKFLVKVNRGGAHAPQYVLRVDRLPIQTTTNRKLALVMGRFTAEDAVKSMQNSHCNPELVSVRVSA
Ga0209221_100009537	F005961	GAG	MKMLLYVGLLLIVLGVASLVVPIPHTQTEGIKVGNANLGVQTSHSERVAPIVSIVLIAGGIALGLAAARSRN
Ga0209221_100009540	F000828	GGTGG	MEERKSIFDEQYRVVAIEGDRLVIRGILSGETLTIINPQPATPLTQEEYPVGKLIALTDPSGSLPN